.. _reference:

****************
Reference Manual
****************

.. currentmodule:: schemarecomb


Primary Classes and Functions
=============================

.. autosummary::
    :toctree: generated/
    :template: class_or_function.rst

    generate_libraries

    Library

    ParentSequences

    PDBStructure


Additional Modules
==================

.. autosummary::
    :toctree: generated/
    :template: module.rst

    breakpoints

    energy_functions

    libraries

    optimizers

    parent_alignment
    
    pdb_structure

    restriction_enzymes