schemarecomb.breakpoints

Recombination site discovery in ParentSequences.

Classes

BreakPoint(position, overhangs)	Valid site for Golden Gate Assembly in a parent alignment.
Overhang(ind, seq)	Valid Golden Gate Assembly overhangs (sticky ends).

Functions

block_indices(breakpoints, aln_len)	Get the blocks’ start and end indices given a list of breakpoints.
calculate_breakpoints(parents, codon_options)	Calculate the breakpoints for the parent alignment.