Reference Manual

Primary Classes and Functions

generate_libraries(parents, num_blocks[, …])	Wrapper for optimizers that generate chimeric protein libraries.
Library(breakpoints, energy, …)	A chimeric protein library.
ParentSequences(records[, pdb_structure, …])	Parent protein sequences for recombinant library design.
PDBStructure(amino_acids[, …])	Structure from the Protein Data Bank.

Additional Modules

breakpoints	Recombination site discovery in ParentSequences.
energy_functions	Chimeric library energy calculations.
libraries	Functions and classes that handle Library instances.
optimizers	Module for running the RASPP algorithm.
parent_alignment	Alignment of parental sequences for protein recombination.
pdb_structure	Parsing and manipulation of Protein Data Bank structure files.
restriction_enzymes	Restriction enzymes for Golden Gate Assembly.