schemarecomb.energy_functions

Chimeric library energy calculations.

Library energy should be correlated with the functional fraction of proteins in the library. Thus, a library with high energy is likely to have a smaller number of active chimeras than a low energy library.

Currently, only the SCHEMA energy function is implemented for SCHEMA-RASPP calculation (Endelman et al. 2004). This module is subject to change in future versions.

Classes

EnergyFunction(parents)	Abstract class for making energy functions.
SCHEMA(parents)	Calculates the energy (approximate fraction functional) of a library.

Functions

build_from_str(mod, name, parents)

Build EnergyFunction subclass instance from name and ParentSequences.